PoplarV1, Main, Exploration, bibRecord, 002A91

Expression analysis of LIM gene family in poplar, toward an updated phylogenetic classification.

Identifieur interne : 002A91 ( Main/Exploration ); précédent : 002A90; suivant : 002A92

Expression analysis of LIM gene family in poplar, toward an updated phylogenetic classification.

Auteurs : Dominique Arnaud [France] ; Annabelle Déjardin ; Jean-Charles Leplé ; Marie-Claude Lesage-Descauses ; Nathalie Boizot ; Marc Villar ; Hélène Bénédetti ; Gilles Pilate

Source :

BMC research notes [ 1756-0500 ] ; 2012.

RBID : pubmed:22339987

Descripteurs français

English descriptors

KwdEn :
- Blotting, Western (MeSH), Flowers (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), LIM Domain Proteins (classification), LIM Domain Proteins (genetics), LIM Domain Proteins (metabolism), Phloem (genetics), Phylogeny (MeSH), Plant Proteins (classification), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Roots (genetics), Plant Stems (genetics), Populus (classification), Populus (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Species Specificity (MeSH), Xylem (genetics).
MESH :
- chemical , classification : LIM Domain Proteins, Plant Proteins.
- classification : Populus.
- genetics : Flowers, LIM Domain Proteins, Phloem, Plant Proteins, Plant Roots, Plant Stems, Populus, Xylem.
- chemical , metabolism : LIM Domain Proteins, Plant Proteins.
- Blotting, Western, Gene Expression Profiling, Gene Expression Regulation, Plant, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Species Specificity.

Abstract

BACKGROUND

Plant LIM domain proteins may act as transcriptional activators of lignin biosynthesis and/or as actin binding and bundling proteins. Plant LIM genes have evolved in phylogenetic subgroups differing in their expression profiles: in the whole plant or specifically in pollen. However, several poplar PtLIM genes belong to uncharacterized monophyletic subgroups and the expression patterns of the LIM gene family in a woody plant have not been studied.

FINDINGS

In this work, the expression pattern of the twelve duplicated poplar PtLIM genes has been investigated by semi quantitative RT-PCR in different vegetative and reproductive tissues. As in other plant species, poplar PtLIM genes were widely expressed in the tree or in particular tissues. Especially, PtXLIM1a, PtXLIM1b and PtWLIM1b genes were preferentially expressed in the secondary xylem, suggesting a specific function in wood formation. Moreover, the expression of these genes and of the PtPLIM2a gene was increased in tension wood. Western-blot analysis confirmed the preferential expression of PtXLIM1a protein during xylem differentiation and tension wood formation. Genes classified within the pollen specific PLIM2 and PLIM2-like subgroups were all strongly expressed in pollen but also in cottony hairs. Interestingly, pairs of duplicated PtLIM genes exhibited different expression patterns indicating subfunctionalisations in specific tissues.

CONCLUSIONS

The strong expression of several LIM genes in cottony hairs and germinating pollen, as well as in xylem fibers suggests an involvement of plant LIM domain proteins in the control of cell expansion. Comparisons of expression profiles of poplar LIM genes with the published functions of closely related plant LIM genes suggest conserved functions in the areas of lignin biosynthesis, pollen tube growth and mechanical stress response. Based on these results, we propose a novel nomenclature of poplar LIM domain proteins.

DOI: 10.1186/1756-0500-5-102
PubMed: 22339987
PubMed Central: PMC3392731

Affiliations:

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Le document en format XML

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<author><name sortKey="Lesage Descauses, Marie Claude" sort="Lesage Descauses, Marie Claude" uniqKey="Lesage Descauses M" first="Marie-Claude" last="Lesage-Descauses">Marie-Claude Lesage-Descauses</name>
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<author><name sortKey="Villar, Marc" sort="Villar, Marc" uniqKey="Villar M" first="Marc" last="Villar">Marc Villar</name>
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<author><name sortKey="Benedetti, Helene" sort="Benedetti, Helene" uniqKey="Benedetti H" first="Hélène" last="Bénédetti">Hélène Bénédetti</name>
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<term>Flowers (genetics)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>LIM Domain Proteins (classification)</term>
<term>LIM Domain Proteins (genetics)</term>
<term>LIM Domain Proteins (metabolism)</term>
<term>Phloem (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (classification)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plant Roots (genetics)</term>
<term>Plant Stems (genetics)</term>
<term>Populus (classification)</term>
<term>Populus (genetics)</term>
<term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term>
<term>Species Specificity (MeSH)</term>
<term>Xylem (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Fleurs (génétique)</term>
<term>Phloème (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (classification)</term>
<term>Populus (génétique)</term>
<term>Protéines végétales (classification)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Protéines à domaine LIM (classification)</term>
<term>Protéines à domaine LIM (génétique)</term>
<term>Protéines à domaine LIM (métabolisme)</term>
<term>RT-PCR (MeSH)</term>
<term>Racines de plante (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Spécificité d'espèce (MeSH)</term>
<term>Technique de Western (MeSH)</term>
<term>Tiges de plante (génétique)</term>
<term>Xylème (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>LIM Domain Proteins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Flowers</term>
<term>LIM Domain Proteins</term>
<term>Phloem</term>
<term>Plant Proteins</term>
<term>Plant Roots</term>
<term>Plant Stems</term>
<term>Populus</term>
<term>Xylem</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Fleurs</term>
<term>Phloème</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Protéines à domaine LIM</term>
<term>Racines de plante</term>
<term>Tiges de plante</term>
<term>Xylème</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>LIM Domain Proteins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Protéines végétales</term>
<term>Protéines à domaine LIM</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Blotting, Western</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Phylogeny</term>
<term>Reverse Transcriptase Polymerase Chain Reaction</term>
<term>Species Specificity</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term>
<term>Phylogenèse</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Protéines à domaine LIM</term>
<term>RT-PCR</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Spécificité d'espèce</term>
<term>Technique de Western</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Plant LIM domain proteins may act as transcriptional activators of lignin biosynthesis and/or as actin binding and bundling proteins. Plant LIM genes have evolved in phylogenetic subgroups differing in their expression profiles: in the whole plant or specifically in pollen. However, several poplar PtLIM genes belong to uncharacterized monophyletic subgroups and the expression patterns of the LIM gene family in a woody plant have not been studied.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>FINDINGS</b>
</p>
<p>In this work, the expression pattern of the twelve duplicated poplar PtLIM genes has been investigated by semi quantitative RT-PCR in different vegetative and reproductive tissues. As in other plant species, poplar PtLIM genes were widely expressed in the tree or in particular tissues. Especially, PtXLIM1a, PtXLIM1b and PtWLIM1b genes were preferentially expressed in the secondary xylem, suggesting a specific function in wood formation. Moreover, the expression of these genes and of the PtPLIM2a gene was increased in tension wood. Western-blot analysis confirmed the preferential expression of PtXLIM1a protein during xylem differentiation and tension wood formation. Genes classified within the pollen specific PLIM2 and PLIM2-like subgroups were all strongly expressed in pollen but also in cottony hairs. Interestingly, pairs of duplicated PtLIM genes exhibited different expression patterns indicating subfunctionalisations in specific tissues.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>The strong expression of several LIM genes in cottony hairs and germinating pollen, as well as in xylem fibers suggests an involvement of plant LIM domain proteins in the control of cell expansion. Comparisons of expression profiles of poplar LIM genes with the published functions of closely related plant LIM genes suggest conserved functions in the areas of lignin biosynthesis, pollen tube growth and mechanical stress response. Based on these results, we propose a novel nomenclature of poplar LIM domain proteins.</p>
</div>
</front>
</TEI>
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<ArticleTitle>Expression analysis of LIM gene family in poplar, toward an updated phylogenetic classification.</ArticleTitle>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Plant LIM domain proteins may act as transcriptional activators of lignin biosynthesis and/or as actin binding and bundling proteins. Plant LIM genes have evolved in phylogenetic subgroups differing in their expression profiles: in the whole plant or specifically in pollen. However, several poplar PtLIM genes belong to uncharacterized monophyletic subgroups and the expression patterns of the LIM gene family in a woody plant have not been studied.</AbstractText>
<AbstractText Label="FINDINGS" NlmCategory="RESULTS">In this work, the expression pattern of the twelve duplicated poplar PtLIM genes has been investigated by semi quantitative RT-PCR in different vegetative and reproductive tissues. As in other plant species, poplar PtLIM genes were widely expressed in the tree or in particular tissues. Especially, PtXLIM1a, PtXLIM1b and PtWLIM1b genes were preferentially expressed in the secondary xylem, suggesting a specific function in wood formation. Moreover, the expression of these genes and of the PtPLIM2a gene was increased in tension wood. Western-blot analysis confirmed the preferential expression of PtXLIM1a protein during xylem differentiation and tension wood formation. Genes classified within the pollen specific PLIM2 and PLIM2-like subgroups were all strongly expressed in pollen but also in cottony hairs. Interestingly, pairs of duplicated PtLIM genes exhibited different expression patterns indicating subfunctionalisations in specific tissues.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The strong expression of several LIM genes in cottony hairs and germinating pollen, as well as in xylem fibers suggests an involvement of plant LIM domain proteins in the control of cell expansion. Comparisons of expression profiles of poplar LIM genes with the published functions of closely related plant LIM genes suggest conserved functions in the areas of lignin biosynthesis, pollen tube growth and mechanical stress response. Based on these results, we propose a novel nomenclature of poplar LIM domain proteins.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Arnaud</LastName>
<ForeName>Dominique</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>INRA, UR0588 Amélioration, Génétique et Physiologie Forestières, CS 40001 Ardon, F-45075 Orléans Cedex 2, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Déjardin</LastName>
<ForeName>Annabelle</ForeName>
<Initials>A</Initials>
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<Author ValidYN="Y"><LastName>Leplé</LastName>
<ForeName>Jean-Charles</ForeName>
<Initials>JC</Initials>
</Author>
<Author ValidYN="Y"><LastName>Lesage-Descauses</LastName>
<ForeName>Marie-Claude</ForeName>
<Initials>MC</Initials>
</Author>
<Author ValidYN="Y"><LastName>Boizot</LastName>
<ForeName>Nathalie</ForeName>
<Initials>N</Initials>
</Author>
<Author ValidYN="Y"><LastName>Villar</LastName>
<ForeName>Marc</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Bénédetti</LastName>
<ForeName>Hélène</ForeName>
<Initials>H</Initials>
</Author>
<Author ValidYN="Y"><LastName>Pilate</LastName>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D015153" MajorTopicYN="N">Blotting, Western</DescriptorName>
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</MeshHeading>
<MeshHeading><DescriptorName UI="D052585" MajorTopicYN="N">Phloem</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D052584" MajorTopicYN="N">Xylem</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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Expression analysis of LIM gene family in poplar, toward an updated phylogenetic classification.

Expression analysis of LIM gene family in poplar, toward an updated phylogenetic classification.

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